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CNRS formation entreprises - Formation Phylogénie moléculaire - cycle 1
L'organisme de formation continue du CNRS
Accueil > Phylogénie moléculaire - cycle 1

Formation - Phylogénie moléculaire - cycle 1

Se préinscrire ou s'inscrire à cette formation Télécharger cette fiche
RESPONSABLE

Stéphane GUINDON

Chargé de recherche

UMR 5506

LIEU

MONTPELLIER (34)

ORGANISATION

3 jours
De 8 à 12 stagiaires

MÉTHODES PÉDAGOGIQUES

- Alternance de cours (10 h) et de TD / TP (7,5 h)
- TP encadrés par 2 intervenants
Tout au long de la formation, des exercices corrigés permettront au stagiaire d'évaluer son acquisition des connaissances.
Un fichier au format PDF sera mis à disposition du stagiaire.

COÛT PÉDAGOGIQUE

1200 Euros

A L'ISSUE DE LA FORMATION

Evaluation de la formation par les stagiaires
Envoi d'une attestation de formation

DATE DU STAGE

24005 : Nous consulter à cfe.contact@cnrs.fr / 01 69 82 44 55

OBJECTIF
-

Savoir inférer un arbre phylogénétique et l'interpréter

PUBLICS
Chercheurs et ingénieurs

Afin d'adapter le contenu du stage aux attentes des stagiaires, un questionnaire téléchargeable ICI devra être complété et renvoyé au moment de l'inscription.
PRÉREQUIS
- Savoir ce à quoi correspondent des séquences génétiques homologues
- Avoir déjà utilisé les logiciels de base en bioinformatique
- Connaître les notions de base en statistiques (tests, lois probabilistes usuelles, méthodes simples d'estimation de paramètres)
- Avoir des notions de programmation
PROGRAMME
- Lignes de commandes Linux
- Le format Newick
- Dessin d'arbres
- Alignements multiples et nettoyage
- Modèles d'évolution
- Choix de modèles
- Définitions et propriétés des arbres
- Méthodes de parcimonie
- Méthodes de distance
- Maximum de vraisemblance
- Reconstruction phylogénétique bayésienne
- Bootstraps et autres supports de branches

Programme détaillé téléchargeable ICI
Ce programme pourra être ajusté en fonction du profil des participants.

Cette formation pourra être poursuivie par une formation de phylogénie avancée.
EQUIPEMENT
Un ordinateur sera mis à disposition de chaque stagiaire.
INTERVENANTS
F. Pardi, S. Guindon (chercheurs), A.-M. Chifolleau (maîtresse de conférences) et V. Lefort (ingénieur)
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